Stem-loop sequence hsa-mir-575

Accession

MI0003582

Symbol

HGNC:MIR575

Description

Homo sapiens miR-575 stem-loop

Gene family

MIPF0000586; mir-575

Stem-loop

---------aauuca  -    -   -         -  -  u   --        
               gc ccug cca cuggcuuau gu ca gac  cuugggc 
               || |||| ||| ||||||||| || || |||  |||||| u
               cg ggac ggu gaccgagua ca gu cug  ggacuca 
cucaacucaccguga  a    a   u         a  c  -   uc        

Genome context

• Coordinates (GRCh37.p5): chr4: 83674490-83674583 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000252635 ; SCD5-001; intron 1

  OTTHUMT00000252636 ; SCD5-002; intron 1

  OTTHUMT00000252635 ; SCD5-001; intron 1

  OTTHUMT00000252636 ; SCD5-002; intron 1

  OTTHUMT00000252635 ; SCD5-001; intron 1

  OTTHUMT00000252636 ; SCD5-002; intron 1

  ENST00000319540 ; SCD5-001; intron 1

  ENST00000273908 ; SCD5-002; intron 1

  ENST00000282709 ; SCD5-201; intron 1

  ENST00000319540 ; SCD5-001; intron 1

  ENST00000273908 ; SCD5-002; intron 1

  ENST00000282709 ; SCD5-201; intron 1

  ENST00000319540 ; SCD5-001; intron 1

  ENST00000273908 ; SCD5-002; intron 1

  ENST00000282709 ; SCD5-201; intron 1

Database links

• ENTREZGENE: 693160;MIR575
• HGNC: 32831;MIR575

Mature sequence hsa-miR-575

• Accession: MIMAT0003240
• Sequence: 61 - gagccaguuggacaggagc - 79
• Evidence: experimental; Microarray [1], SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-575
  • MICRORNA.ORG:hsa-miR-575
  • MIRDB:hsa-miR-575
  • RNA22-HSA:hsa-miR-575
  • TARGETMINER:hsa-miR-575
  • TARGETSCAN-VERT:hsa-miR-575

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).