Stem-loop sequence hsa-mir-567

Accession

MI0003573

Symbol

HGNC:MIR567

Description

Homo sapiens miR-567 stem-loop

Gene family

MIPF0000555; mir-567

Stem-loop

------------ggauucuua   gaca              g      ---  u 
                     uag    guauguucuuccag acagaa   ca u
                     |||    |||||||||||||| ||||||   || c
                     auc    cguacaagaagguc uguuuu   gu u
ucguuauugaaaaaaaaaaaa   aaaa              a      auc  u 

Deep sequencing

123 reads, 13 experiments

Genome context

• Coordinates (GRCh37.p5): chr3: 111831648-111831745 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000353963 ; C3orf52-003; intron 2

  OTTHUMT00000353966 ; C3orf52-006; intron 2

  OTTHUMT00000353966 ; C3orf52-006; intron 2

  OTTHUMT00000353963 ; C3orf52-003; intron 2

  OTTHUMT00000353966 ; C3orf52-006; intron 2

  OTTHUMT00000353963 ; C3orf52-003; intron 2

  OTTHUMT00000353962 ; C3orf52-002; intron 3

  OTTHUMT00000353964 ; C3orf52-004; intron 3

  OTTHUMT00000353964 ; C3orf52-004; intron 3

  OTTHUMT00000353962 ; C3orf52-002; intron 3

  OTTHUMT00000353964 ; C3orf52-004; intron 3

  OTTHUMT00000353962 ; C3orf52-002; intron 3

  OTTHUMT00000353961 ; C3orf52-001; intron 4

  OTTHUMT00000353961 ; C3orf52-001; intron 4

  OTTHUMT00000353961 ; C3orf52-001; intron 4

  ENST00000494096 ; C3orf52-006; intron 2

  ENST00000467942 ; C3orf52-003; intron 2

  ENST00000494096 ; C3orf52-006; intron 2

  ENST00000467942 ; C3orf52-003; intron 2

  ENST00000494096 ; C3orf52-006; intron 2

  ENST00000467942 ; C3orf52-003; intron 2

  ENST00000480282 ; C3orf52-004; intron 3

  ENST00000484828 ; C3orf52-002; intron 3

  ENST00000430855 ; C3orf52-201; intron 3

  ENST00000431717 ; C3orf52-202; intron 3

  ENST00000480282 ; C3orf52-004; intron 3

  ENST00000484828 ; C3orf52-002; intron 3

  ENST00000430855 ; C3orf52-201; intron 3

  ENST00000431717 ; C3orf52-202; intron 3

  ENST00000480282 ; C3orf52-004; intron 3

  ENST00000484828 ; C3orf52-002; intron 3

  ENST00000430855 ; C3orf52-201; intron 3

  ENST00000431717 ; C3orf52-202; intron 3

  ENST00000264848 ; C3orf52-001; intron 4

  ENST00000264848 ; C3orf52-001; intron 4

  ENST00000264848 ; C3orf52-001; intron 4

Database links

• ENTREZGENE: 693152;MIR567
• HGNC: 32823;MIR567

Mature sequence hsa-miR-567

• Accession: MIMAT0003231
• Sequence: 16 - aguauguucuuccaggacagaac - 38
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-567
  • MICRORNA.ORG:hsa-miR-567
  • MIRDB:hsa-miR-567
  • RNA22-HSA:hsa-miR-567
  • TARGETMINER:hsa-miR-567
  • TARGETSCAN-VERT:hsa-miR-567

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).