Stem-loop sequence hsa-mir-564

AccessionMI0003570 (change log)
Symbol HGNC:MIR564
DescriptionHomo sapiens miR-564 stem-loop
Gene family MIPF0000612; mir-564
Literature search

10 open access papers mention hsa-mir-564
(85 sentences)

Stem-loop
   ---c   -ca    g   ca           a  ----    aaca     g 
5'     ggg   gcgg ugc  ggcacgguguc gc    aggc    uggcc a
       |||   |||| |||  ||||||||||| ||    ||||    |||||  
3'     ccc   cgcc gcg  cugugccgcgg cg    uccg    gccgg g
   cagu   aug    a   -c           -  ggcc    --gg     a 
Get sequence
Deep sequencing
41 reads, 0 reads per million, 29 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr3: 44861888-44861981 [+]
sense
OTTHUMT00000343901 ; KIF15-005; intron 1
OTTHUMT00000343900 ; KIF15-004; intron 11
OTTHUMT00000344250 ; KIF15-007; intron 15
OTTHUMT00000343832 ; KIF15-002; intron 19
OTTHUMT00000343831 ; KIF15-001; intron 20
ENST00000453693 ; KIF15-005; intron 1
ENST00000425755 ; KIF15-004; intron 11
ENST00000481166 ; KIF15-007; intron 15
ENST00000438321 ; KIF15-002; intron 19
ENST00000326047 ; KIF15-001; intron 20
Database links

Mature sequence hsa-miR-564

Accession MIMAT0003228
Sequence

16 - 

aggcacggugucagcaggc

 - 34

Get sequence
Deep sequencing15 reads, 11 experiments
Evidence experimental; RT-PCR [1], SAGE [1]
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).