Stem-loop sequence hsa-mir-564

Accession MI0003570
Symbol HGNC:MIR564
Description Homo sapiens miR-564 stem-loop
Gene family MIPF0000612; mir-564
Stem-loop 
---c   -ca    g   ca           a  ----    aaca     g 
    ggg   gcgg ugc  ggcacgguguc gc    aggc    uggcc a
    |||   |||| |||  ||||||||||| ||    ||||    |||||  
    ccc   cgcc gcg  cugugccgcgg cg    uccg    gccgg g
cagu   aug    a   -c           -  ggcc    --gg     a
Get sequence
Deep sequencing
3 reads, 3 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr3: 44903380-44903473 [+]
sense
OTTHUMT00000256750 ; TMEM42-001; 3'UTR (exon 1)
OTTHUMT00000343889 ; TMEM42-002; exon 1
OTTHUMT00000256750 ; TMEM42-001; 3'UTR (exon 1)
OTTHUMT00000343889 ; TMEM42-002; exon 1
OTTHUMT00000256750 ; TMEM42-001; 3'UTR (exon 1)
OTTHUMT00000343889 ; TMEM42-002; exon 1
OTTHUMT00000343902 ; KIF15-006; intron 6
OTTHUMT00000343902 ; KIF15-006; intron 6
OTTHUMT00000343902 ; KIF15-006; intron 6
ENST00000302392 ; TMEM42-001; 3'UTR (exon 1)
ENST00000477126 ; TMEM42-002; exon 1
ENST00000302392 ; TMEM42-001; 3'UTR (exon 1)
ENST00000477126 ; TMEM42-002; exon 1
ENST00000302392 ; TMEM42-001; 3'UTR (exon 1)
ENST00000477126 ; TMEM42-002; exon 1
ENST00000422209 ; KIF15-006; intron 6
ENST00000422209 ; KIF15-006; intron 6
ENST00000422209 ; KIF15-006; intron 6
Database links

Mature sequence hsa-miR-564

Accession MIMAT0003228
Sequence

16 -  

aggcacggugucagcaggc

 - 34

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; RT-PCR [1], SAGE [1]
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).