Stem-loop sequence hsa-mir-562

Accession

MI0003568

Symbol

HGNC:MIR562

Description

Homo sapiens miR-562 stem-loop

Gene family

MIPF0000512; mir-562

Stem-loop

agugaa       -----   -  u     -   u       ua   u   u u 
      auugcua     ggu ca auggu cag cuacuuu  gag aau g g
      |||||||     ||| || ||||| ||| |||||||  ||| ||| | a
      uaacggu     uca gu uacca guc gaugaaa  cuu uug c a
------       guccc   c  u     u   -       --   u   u a 

Genome context

• Coordinates (GRCh37.p5): chr2: 233037363-233037457 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000330983 ; DIS3L2-010; intron 1

  OTTHUMT00000330983 ; DIS3L2-010; intron 1

  OTTHUMT00000330983 ; DIS3L2-010; intron 1

  OTTHUMT00000330977 ; DIS3L2-004; intron 8

  OTTHUMT00000330988 ; DIS3L2-015; intron 8

  OTTHUMT00000330977 ; DIS3L2-004; intron 8

  OTTHUMT00000330988 ; DIS3L2-015; intron 8

  OTTHUMT00000330977 ; DIS3L2-004; intron 8

  OTTHUMT00000330988 ; DIS3L2-015; intron 8

  OTTHUMT00000330974 ; DIS3L2-001; intron 9

  OTTHUMT00000330975 ; DIS3L2-002; intron 9

  OTTHUMT00000330978 ; DIS3L2-005; intron 9

  OTTHUMT00000330974 ; DIS3L2-001; intron 9

  OTTHUMT00000330975 ; DIS3L2-002; intron 9

  OTTHUMT00000330978 ; DIS3L2-005; intron 9

  OTTHUMT00000330974 ; DIS3L2-001; intron 9

  OTTHUMT00000330975 ; DIS3L2-002; intron 9

  OTTHUMT00000330978 ; DIS3L2-005; intron 9

  ENST00000424049 ; DIS3L2-010; intron 1

  ENST00000424049 ; DIS3L2-010; intron 1

  ENST00000424049 ; DIS3L2-010; intron 1

  ENST00000445090 ; DIS3L2-004; intron 8

  ENST00000409307 ; DIS3L2-015; intron 8

  ENST00000445090 ; DIS3L2-004; intron 8

  ENST00000409307 ; DIS3L2-015; intron 8

  ENST00000445090 ; DIS3L2-004; intron 8

  ENST00000409307 ; DIS3L2-015; intron 8

  ENST00000273009 ; DIS3L2-001; intron 9

  ENST00000390005 ; DIS3L2-002; intron 9

  ENST00000433430 ; DIS3L2-005; intron 9

  ENST00000542873 ; DIS3L2-204; intron 9

  ENST00000431466 ; DIS3L2-203; intron 9

  ENST00000325385 ; DIS3L2-201; intron 9

  ENST00000273009 ; DIS3L2-001; intron 9

  ENST00000390005 ; DIS3L2-002; intron 9

  ENST00000433430 ; DIS3L2-005; intron 9

  ENST00000542873 ; DIS3L2-204; intron 9

  ENST00000431466 ; DIS3L2-203; intron 9

  ENST00000325385 ; DIS3L2-201; intron 9

  ENST00000273009 ; DIS3L2-001; intron 9

  ENST00000390005 ; DIS3L2-002; intron 9

  ENST00000433430 ; DIS3L2-005; intron 9

  ENST00000325385 ; DIS3L2-201; intron 9

Database links

• ENTREZGENE: 693147;MIR562
• HGNC: 32818;MIR562

Mature sequence hsa-miR-562

• Accession: MIMAT0003226
• Sequence: 61 - aaaguagcuguaccauuugc - 80
• Evidence: experimental; SAGE [1]
• Validated targets:
  • MIRTARBASE:hsa-miR-562
  • TARBASE:hsa-miR-562
• Predicted targets:
  • DIANA-MICROT:hsa-miR-562
  • MICRORNA.ORG:hsa-miR-562
  • MIRDB:hsa-miR-562
  • RNA22-HSA:hsa-miR-562
  • TARGETMINER:hsa-miR-562
  • TARGETSCAN-VERT:hsa-miR-562

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).