Stem-loop sequence hsa-mir-558

Accession MI0003564
Symbol HGNC:MIR558
Description Homo sapiens miR-558 stem-loop
Gene family MIPF0000538; mir-558
Stem-loop 
gugugugu  g   g      u                  ua  cu     
        gu ugu uguggu auuuugguauaguagcuc  ga  cuau 
        || ||| |||||| ||||||||||||||||||  ||  ||| u
        cg gca acacca uaaaaccaugucgucgag  cu  gaua 
------gu  g   a      -                  uc  uu
Get sequence
Deep sequencing
12 reads, 7 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr2: 32757220-32757313 [+]
sense
OTTHUMT00000325212 ; BIRC6-002; intron 4
OTTHUMT00000325212 ; BIRC6-002; intron 4
OTTHUMT00000325212 ; BIRC6-002; intron 4
OTTHUMT00000318769 ; BIRC6-001; intron 61
OTTHUMT00000318769 ; BIRC6-001; intron 61
OTTHUMT00000318769 ; BIRC6-001; intron 61
ENST00000471232 ; BIRC6-002; intron 4
ENST00000471232 ; BIRC6-002; intron 4
ENST00000471232 ; BIRC6-002; intron 4
ENST00000421745 ; BIRC6-001; intron 61
ENST00000421745 ; BIRC6-001; intron 61
ENST00000421745 ; BIRC6-001; intron 61
Database links

Mature sequence hsa-miR-558

Accession MIMAT0003222
Sequence

61 -  

ugagcugcuguaccaaaau

 - 79

Get sequence
Evidence experimental; RT-PCR [1], SAGE [1]
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).