Stem-loop sequence hsa-mir-554

Accession

MI0003559

Symbol

HGNC:MIR554

Description

Homo sapiens miR-554 stem-loop

Gene family

MIPF0000551; mir-554

Stem-loop

-----a  u   uaaccuu      --------          --      a   g 
      cc gag       ugcuag        uccugacuca  gccagu cug u
      || |||       ||||||        ||||||||||  |||||| |||  
      gg cuc       acgguu        gggacugggu  ugguca gau c
ucuacg  u   --ucucu      uuauacuu          ag      -   u 

Genome context

• Coordinates (GRCh37.p5): chr1: 151518272-151518367 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000035022 ; TUFT1-006; intron 1

  OTTHUMT00000316340 ; TUFT1-010; intron 1

  OTTHUMT00000035023 ; TUFT1-008; intron 1

  OTTHUMT00000316342 ; TUFT1-012; intron 1

  OTTHUMT00000257954 ; RP11-74C1.4-001; intron 1

  OTTHUMT00000035022 ; TUFT1-006; intron 1

  OTTHUMT00000316340 ; TUFT1-010; intron 1

  OTTHUMT00000035023 ; TUFT1-008; intron 1

  OTTHUMT00000316342 ; TUFT1-012; intron 1

  OTTHUMT00000257954 ; RP11-74C1.4-001; intron 1

  OTTHUMT00000035022 ; TUFT1-006; intron 1

  OTTHUMT00000316340 ; TUFT1-010; intron 1

  OTTHUMT00000035023 ; TUFT1-008; intron 1

  OTTHUMT00000316342 ; TUFT1-012; intron 1

  OTTHUMT00000257954 ; RP11-74C1.4-001; intron 1

  ENST00000368849 ; TUFT1-006; intron 1

  ENST00000392712 ; TUFT1-010; intron 1

  ENST00000368848 ; TUFT1-008; intron 1

  ENST00000498606 ; TUFT1-012; intron 1

  ENST00000544350 ; TUFT1-204; intron 1

  ENST00000507671 ; TUFT1-202; intron 1

  ENST00000353024 ; TUFT1-201; intron 1

  ENST00000538902 ; TUFT1-203; intron 1

  ENST00000434112 ; RP11-74C1.4-001; intron 1

  ENST00000368849 ; TUFT1-006; intron 1

  ENST00000392712 ; TUFT1-010; intron 1

  ENST00000368848 ; TUFT1-008; intron 1

  ENST00000498606 ; TUFT1-012; intron 1

  ENST00000544350 ; TUFT1-204; intron 1

  ENST00000507671 ; TUFT1-202; intron 1

  ENST00000353024 ; TUFT1-201; intron 1

  ENST00000538902 ; TUFT1-203; intron 1

  ENST00000434112 ; RP11-74C1.4-001; intron 1

  ENST00000368849 ; TUFT1-006; intron 1

  ENST00000392712 ; TUFT1-010; intron 1

  ENST00000368848 ; TUFT1-008; intron 1

  ENST00000498606 ; TUFT1-012; intron 1

  ENST00000353024 ; TUFT1-201; intron 1

  ENST00000538902 ; TUFT1-202; intron 1

  ENST00000434112 ; RP11-74C1.4-001; intron 1

Database links

• ENTREZGENE: 693139;MIR554
• HGNC: 32810;MIR554

Mature sequence hsa-miR-554

• Accession: MIMAT0003217
• Sequence: 16 - gcuaguccugacucagccagu - 36
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-554
  • MICRORNA.ORG:hsa-miR-554
  • MIRDB:hsa-miR-554
  • RNA22-HSA:hsa-miR-554
  • TARGETMINER:hsa-miR-554
  • TARGETSCAN-VERT:hsa-miR-554

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).