Stem-loop sequence hsa-mir-553

Accession MI0003558
Symbol HGNC:MIR553
Description Homo sapiens miR-553 stem-loop
Gene family MIPF0000487; mir-553
Stem-loop 
cuucaau    u                   g  uu 
       uuua uuuaaaacggugagauuuu uu  g
       |||| ||||||||||||||||||| ||   
       gagu agauuuugucgcucuaaaa ag  u
------g    c                   g  uc
Get sequence
Deep sequencing
2 reads, 2 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr1: 100746797-100746864 [+]
sense
OTTHUMT00000030098 ; RTCD1-001; intron 8
OTTHUMT00000030098 ; RTCD1-001; intron 8
OTTHUMT00000030098 ; RTCD1-001; intron 8
OTTHUMT00000030099 ; RTCD1-002; intron 9
OTTHUMT00000030099 ; RTCD1-002; intron 9
OTTHUMT00000030099 ; RTCD1-002; intron 9
ENST00000370128 ; RTCD1-001; intron 8
ENST00000370128 ; RTCD1-001; intron 8
ENST00000370128 ; RTCA-001; intron 8
ENST00000260563 ; RTCD1-002; intron 9
ENST00000260563 ; RTCD1-002; intron 9
ENST00000260563 ; RTCA-002; intron 9
Database links

Mature sequence hsa-miR-553

Accession MIMAT0003216
Sequence

16 -  

aaaacggugagauuuuguuuu

 - 36

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; SAGE [1]
Predicted targets

References

1
PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).