Stem-loop sequence rno-mir-369

Accession

MI0003551

Description

Rattus norvegicus miR-369 stem-loop

Gene family

MIPF0000018; mir-154

Stem-loop

      u  ag               ua      cuu  c 
gguacu ga  ggagaucgaccgugu  uauucg   ag u
|||||| ||  |||||||||||||||  ||||||   ||  
cuauga cu  uuucuaguugguaca  auaagc   uc g
      -  cu               ua      --u  a 

Genome context

• Coordinates (RGSC3.4): 6: 134424778-134424856 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-369

• rno-mir-3592: 6: 134415246-134415361 [-]
• rno-mir-382: 6: 134415263-134415342 [+]
• rno-mir-134: 6: 134415632-134415704 [+]
• rno-mir-668: 6: 134416226-134416293 [+]
• rno-mir-485: 6: 134416384-134416462 [+]
• rno-mir-154: 6: 134419671-134419754 [+]
• rno-mir-496: 6: 134420368-134420446 [+]
• rno-mir-377: 6: 134421775-134421846 [+]
• rno-mir-541: 6: 134423740-134423829 [+]
• rno-mir-409b: 6: 134424503-134424582 [-]
• rno-mir-409a: 6: 134424504-134424580 [+]
• rno-mir-412: 6: 134424656-134424725 [+]
• rno-mir-3578: 6: 134424757-134424873 [-]
• rno-mir-369: 6: 134424778-134424856 [+]
• rno-mir-410: 6: 134425082-134425157 [+]
• rno-mir-3072: 6: 134429885-134429995 [+]

Database links

• ENTREZGENE: 100314087;Mir369

Mature sequence rno-miR-369-5p

• Accession: MIMAT0003206
• Sequence: 14 - agaucgaccguguuauauucgc - 35
• Evidence: experimental; cloned [2], SOLiD [3]
• Predicted targets:
  • MICRORNA.ORG:rno-miR-369-5p
  • MIRDB:rno-miR-369-5p
  • TARGETSCAN-VERT:rno-miR-369-5p

Mature sequence rno-miR-369-3p

• Accession: MIMAT0003207
• Sequence: 49 - aauaauacaugguugaucuuu - 69
• Evidence: experimental; cloned [2], SOLiD [3]
• Predicted targets:
  • MICRORNA.ORG:rno-miR-369-3p
  • MIRDB:rno-miR-369-3p
  • TARGETSCAN-VERT:rno-miR-369-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).