Stem-loop sequence rno-mir-382

Accession

MI0003548

Description

Rattus norvegicus miR-382 stem-loop

Gene family

MIPF0000018; mir-154

Stem-loop

      u       -a           ug      - uuu 
gguacu gaagaga  guuguucgugg  gauucg c   a
|||||| |||||||  |||||||||||  |||||| |   c
ccauga cuuuuuu  caacaggcacu  cuaagc g   u
      -       ca           ua      a ugu 

Genome context

• Coordinates (RGSC3.4): 6: 134415263-134415342 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-382

• rno-mir-381: 6: 134407700-134407760 [+]
• rno-mir-487b: 6: 134408209-134408290 [+]
• rno-mir-3576: 6: 134408897-134409011 [-]
• rno-mir-539: 6: 134408917-134408992 [+]
• rno-mir-6331: 6: 134409663-134409785 [+]
• rno-mir-544: 6: 134410254-134410331 [+]
• rno-mir-3592: 6: 134415246-134415361 [-]
• rno-mir-382: 6: 134415263-134415342 [+]
• rno-mir-134: 6: 134415632-134415704 [+]
• rno-mir-668: 6: 134416226-134416293 [+]
• rno-mir-485: 6: 134416384-134416462 [+]
• rno-mir-154: 6: 134419671-134419754 [+]
• rno-mir-496: 6: 134420368-134420446 [+]
• rno-mir-377: 6: 134421775-134421846 [+]
• rno-mir-541: 6: 134423740-134423829 [+]
• rno-mir-409b: 6: 134424503-134424582 [-]
• rno-mir-409a: 6: 134424504-134424580 [+]
• rno-mir-412: 6: 134424656-134424725 [+]
• rno-mir-3578: 6: 134424757-134424873 [-]
• rno-mir-369: 6: 134424778-134424856 [+]
• rno-mir-410: 6: 134425082-134425157 [+]

Database links

• ENTREZGENE: 100314085;Mir382

Mature sequence rno-miR-382-5p

• Accession: MIMAT0003201
• Previous IDs: rno-miR-382
• Sequence: 13 - gaaguuguucgugguggauucg - 34
• Evidence: experimental; cloned [3], SOLiD [4]
• Validated targets:
  • TARBASE:rno-miR-382-5p
• Predicted targets:
  • MICRORNA.ORG:rno-miR-382-5p
  • MIRDB:rno-miR-382-5p
  • TARGETSCAN-VERT:rno-miR-382

Mature sequence rno-miR-382-3p

• Accession: MIMAT0003202
• Previous IDs: rno-miR-382*
• Sequence: 49 - aaucauucacggacaacacuu - 69
• Evidence: experimental; cloned [2], Northern [2], SOLiD [4]
• Predicted targets:
  • MICRORNA.ORG:rno-miR-382-3p
  • MIRDB:rno-miR-382-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).