Stem-loop sequence rno-mir-381

Accession MI0003546
Description Rattus norvegicus miR-381 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
  c   g        u        --g   u 
ag gag uugcccuu guauauuc   guu a
|| ||| |||||||| ||||||||   |||  
uc cuc aacgggaa cauauagg   cag u
  u   g        -        gua   u
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134407700-134407760 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-381
rno-mir-495 6: 134399218-134399297 [+]
rno-mir-667 6: 134400500-134400591 [+]
rno-mir-376c 6: 134403524-134403607 [+]
rno-mir-376b 6: 134404180-134404265 [+]
rno-mir-3595 6: 134404672-134404791 [-]
rno-mir-376a 6: 134404690-134404771 [+]
rno-mir-300 6: 134405237-134405315 [+]
rno-mir-381 6: 134407700-134407760 [+]
rno-mir-487b 6: 134408209-134408290 [+]
rno-mir-3576 6: 134408897-134409011 [-]
rno-mir-539 6: 134408917-134408992 [+]
rno-mir-6331 6: 134409663-134409785 [+]
rno-mir-544 6: 134410254-134410331 [+]
rno-mir-3592 6: 134415246-134415361 [-]
rno-mir-382 6: 134415263-134415342 [+]
rno-mir-134 6: 134415632-134415704 [+]
rno-mir-668 6: 134416226-134416293 [+]
rno-mir-485 6: 134416384-134416462 [+]
Database links
  • ENTREZGENE: 100314084;Mir381

Mature sequence rno-miR-381-5p

Accession MIMAT0017220
Previous IDs rno-miR-381*
Sequence

1 -  

agcgagguugcccuuuguauau

 - 22

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-381-3p

Accession MIMAT0003199
Previous IDs rno-miR-381
Sequence

42 -  

uauacaagggcaagcucu

 - 59

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).