Stem-loop sequence rno-mir-376b

Accession MI0003544
Description Rattus norvegicus miR-376b stem-loop
Gene family MIPF0000091; mir-368
Stem-loop 
u        u           a     u         cgug  u 
 uugguauu aaaagguggau uuccu cuaugguua    cu c
 |||||||| ||||||||||| ||||| |||||||||    ||  
 aacuauga uuuuucaccua aagga gauacuaau    gg c
a        c           c     -         ---a  u
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134404180-134404265 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-376b
rno-mir-494 6: 134394868-134394950 [+]
rno-mir-679 6: 134395062-134395198 [+]
rno-mir-666 6: 134397021-134397119 [+]
rno-mir-543 6: 134397158-134397237 [+]
rno-mir-495 6: 134399218-134399297 [+]
rno-mir-667 6: 134400500-134400591 [+]
rno-mir-376c 6: 134403524-134403607 [+]
rno-mir-376b 6: 134404180-134404265 [+]
rno-mir-3595 6: 134404672-134404791 [-]
rno-mir-376a 6: 134404690-134404771 [+]
rno-mir-300 6: 134405237-134405315 [+]
rno-mir-381 6: 134407700-134407760 [+]
rno-mir-487b 6: 134408209-134408290 [+]
rno-mir-3576 6: 134408897-134409011 [-]
rno-mir-539 6: 134408917-134408992 [+]
rno-mir-6331 6: 134409663-134409785 [+]
rno-mir-544 6: 134410254-134410331 [+]
Database links

Mature sequence rno-miR-376b-5p

Accession MIMAT0003195
Previous IDs rno-miR-376b*
Sequence

16 -  

guggauauuccuucuaugguua

 - 37

Get sequence
Evidence experimental; cloned [2-3], SOLiD [4]
Predicted targets

Mature sequence rno-miR-376b-3p

Accession MIMAT0003196
Previous IDs rno-miR-376b
Sequence

53 -  

aucauagaggaacauccacuu

 - 73

Get sequence
Evidence experimental; cloned [2], SOLiD [4]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:17805466 "Cloning and identification of novel microRNAs from rat hippocampus" He X, Zhang Q, Liu Y, Pan X Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
4
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).