Stem-loop sequence mmu-mir-450a-2

Accession

MI0003537

Previous IDs

mmu-mir-450-2

Symbol

MGI:Mirn450-2

Description

Mus musculus miR-450a-2 stem-loop

Gene family

MIPF0000128; mir-450

Stem-loop

       uuu     u              uac 
gaacuau   ugcga guguuccuaauaug   u
|||||||   ||||| ||||||||||||||   a
cuuggua   acguu cguagggguuauau   u
       cuu     u              gag 

Deep sequencing

18452 reads, 95 experiments

Genome context

• Coordinates (GRCm38): chrX: 53048299-53048367 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-450a-2

• mmu-mir-322: chrX: 53054255-53054349 [-]
• mmu-mir-503: chrX: 53053984-53054054 [-]
• mmu-mir-351: chrX: 53053255-53053353 [-]
• mmu-mir-542: chrX: 53049403-53049487 [-]
• mmu-mir-450a-2: chrX: 53048299-53048367 [-]
• mmu-mir-450a-1: chrX: 53048154-53048244 [-]
• mmu-mir-450b: chrX: 53047997-53048078 [-]

Database links

• ENTREZGENE: 723938;Mir450-2
• MGI: 3619411;Mirn450-2

Mature sequence mmu-miR-450a-5p

• Accession: MIMAT0001546
• Previous IDs: mmu-miR-450;mmu-miR-450a-5p;mmu-miR-450a
• Sequence: 8 - uuuugcgauguguuccuaauau - 29
• Deep sequencing: 16638 reads, 80 experiments
• Evidence: experimental; cloned [2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-450a-5p
  • MICRORNA.ORG:mmu-miR-450a-5p
  • MIRDB:mmu-miR-450a-5p
  • RNA22-MMU:mmu-miR-450a-5p
  • TARGETSCAN-VERT:mmu-miR-450a-5p

Mature sequence mmu-miR-450a-2-3p

• Accession: MIMAT0004789
• Previous IDs: mmu-miR-450a-3p;mmu-miR-450a-2*
• Sequence: 43 - auuggggaugcuuugcauucau - 64
• Deep sequencing: 1018 reads, 46 experiments
• Evidence: experimental; cloned [2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-450a-2-3p
  • MICRORNA.ORG:mmu-miR-450a-2-3p
  • MIRDB:mmu-miR-450a-2-3p
  • RNA22-MMU:mmu-miR-450a-2-3p
  • TARGETSCAN-VERT:mmu-miR-450a-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).