Stem-loop sequence hsa-mir-487b

Accession MI0003530
Symbol HGNC:MIR487B
Description Homo sapiens miR-487b stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
u       ug        uuau      c u     uuuug 
 ugguacu  gagagugg    cccugu c guucg     c
 |||||||  ||||||||    |||||| | |||||      
 acuauga  uuuucacc    gggaca g uaagc     u
a       cu        uacu      u c     uguac
Get sequence
Deep sequencing
539 reads, 11 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr14: 101512792-101512875 [+]
sense
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; MIR381HG-001; intron 1
Clustered miRNAs
< 10kb from hsa-mir-487b
hsa-mir-376c chr14: 101506027-101506092 [+]
hsa-mir-376a-2 chr14: 101506406-101506485 [+]
hsa-mir-654 chr14: 101506556-101506636 [+]
hsa-mir-376b chr14: 101506773-101506872 [+]
hsa-mir-376a-1 chr14: 101507119-101507186 [+]
hsa-mir-300 chr14: 101507700-101507782 [+]
hsa-mir-1185-1 chr14: 101509314-101509399 [+]
hsa-mir-1185-2 chr14: 101510535-101510620 [+]
hsa-mir-381 chr14: 101512257-101512331 [+]
hsa-mir-487b chr14: 101512792-101512875 [+]
hsa-mir-539 chr14: 101513658-101513735 [+]
hsa-mir-889 chr14: 101514238-101514316 [+]
hsa-mir-544a chr14: 101514995-101515085 [+]
hsa-mir-655 chr14: 101515887-101515983 [+]
hsa-mir-487a chr14: 101518783-101518862 [+]
hsa-mir-382 chr14: 101520643-101520718 [+]
hsa-mir-134 chr14: 101521024-101521096 [+]
hsa-mir-668 chr14: 101521595-101521660 [+]
hsa-mir-485 chr14: 101521756-101521828 [+]
hsa-mir-323b chr14: 101522556-101522637 [+]
Database links

Mature sequence hsa-miR-487b

Accession MIMAT0003180
Sequence

51 -  

aaucguacagggucauccacuu

 - 72

Get sequence
Deep sequencing 538 reads, 10 experiments
Evidence experimental; cloned [1-2]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).