Stem-loop sequence rno-mir-543

Accession MI0003525
Description Rattus norvegicus miR-543 stem-loop
Gene family MIPF0000110; mir-329
Stem-loop 
      u  u       u  -     --      -    uu 
ggugcu aa gagaagu gc ccgcg  uguuuu ucgc  u
|||||| || ||||||| || |||||  |||||| ||||  a
cuacga uu uucuuca cg ggcgc  acaaag agug  u
      c  u       -  u     uu      c    ua
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134397158-134397237 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-543
rno-mir-379 6: 134388198-134388282 [+]
rno-mir-411 6: 134389347-134389422 [+]
rno-mir-299b 6: 134389793-134389910 [-]
rno-mir-299a 6: 134389822-134389884 [+]
rno-mir-3579 6: 134390971-134391083 [-]
rno-mir-380 6: 134390988-134391064 [+]
rno-mir-323 6: 134391697-134391782 [+]
rno-mir-758 6: 134391996-134392073 [+]
rno-mir-329 6: 134392666-134392762 [+]
rno-mir-494 6: 134394868-134394950 [+]
rno-mir-679 6: 134395062-134395198 [+]
rno-mir-666 6: 134397021-134397119 [+]
rno-mir-543 6: 134397158-134397237 [+]
rno-mir-495 6: 134399218-134399297 [+]
rno-mir-667 6: 134400500-134400591 [+]
rno-mir-376c 6: 134403524-134403607 [+]
rno-mir-376b 6: 134404180-134404265 [+]
rno-mir-3595 6: 134404672-134404791 [-]
rno-mir-376a 6: 134404690-134404771 [+]
rno-mir-300 6: 134405237-134405315 [+]
Database links
  • ENTREZGENE: 100314079;Mir543

Mature sequence rno-miR-543-5p

Accession MIMAT0004787
Previous IDs rno-miR-543
Sequence

14 -  

aaguugcccgcguguuuuucg

 - 34

Get sequence
Evidence experimental; cloned [2], SOLiD [3]
Validated targets
Predicted targets

Mature sequence rno-miR-543-3p

Accession MIMAT0003175
Previous IDs rno-miR-543;rno-miR-543*
Sequence

49 -  

aaacauucgcggugcacuucu

 - 69

Get sequence
Evidence experimental; SOLiD [3]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).