Stem-loop sequence mmu-mir-546

Accession MI0003517
Symbol MGI:Mir546
Description Mus musculus miR-546 stem-loop
Stem-loop 
------------ccucucuucccaaaa     -  -   u   u   ---       c    u    u 
                           cuaaa ca gga cua cau   gguggca ggag cagc a
                           ||||| || ||| ||| |||   ||||||| |||| |||| g
                           gauuu gu ccu gau gug   cuaucgu ucuc guug a
ggagaggaggggucauagugaaacgaa     u  a   u   c   ucc       -    u    u
Get sequence
Deep sequencing
13 reads, 8 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr10: 126998440-126998560 [+]
sense
ENSMUST00000105255 ; Ctdsp2-201; exon 3
ENSMUST00000105256 ; Ctdsp2-202; exon 8
Clustered miRNAs
< 10kb from mmu-mir-546
mmu-mir-26a-2 chr10: 126995530-126995613 [+]
mmu-mir-546 chr10: 126998440-126998560 [+]
Database links

Mature sequence mmu-miR-546

Accession MIMAT0003166
Sequence

32 -  

augguggcacggaguc

 - 47

Get sequence
Deep sequencing 3 reads, 3 experiments
Evidence experimental; cloned [1], Solexa [2]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).