Stem-loop sequence hsa-mir-544a

Accession

MI0003515

Previous IDs

hsa-mir-544

Symbol

HGNC:MIR544

Description

Homo sapiens miR-544a stem-loop

Gene family

MIPF0000436; mir-544

Stem-loop

auuuu      cua    u           -     u   -ga  c 
     caucac   ggga cuuguuaaaaa gcaga ucu   uu a
     ||||||   |||| ||||||||||| ||||| |||   ||  
     guagug   cucu gaacgauuuuu cgucu aga   ag g
uaauc      -aa    u           a     u   acc  g 

Deep sequencing

12 reads, 7 experiments

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCh37.p5): chr14: 101514995-101515085 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1

  OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1

  OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1

  ENST00000553692 ; RP11-909M7.2-001; intron 1

  ENST00000553692 ; RP11-909M7.2-001; intron 1

  ENST00000553692 ; MIR381HG-001; intron 1

Clustered miRNAs

< 10kb from hsa-mir-544a

• hsa-mir-376c: chr14: 101506027-101506092 [+]
• hsa-mir-376a-2: chr14: 101506406-101506485 [+]
• hsa-mir-654: chr14: 101506556-101506636 [+]
• hsa-mir-376b: chr14: 101506773-101506872 [+]
• hsa-mir-376a-1: chr14: 101507119-101507186 [+]
• hsa-mir-300: chr14: 101507700-101507782 [+]
• hsa-mir-1185-1: chr14: 101509314-101509399 [+]
• hsa-mir-1185-2: chr14: 101510535-101510620 [+]
• hsa-mir-381: chr14: 101512257-101512331 [+]
• hsa-mir-487b: chr14: 101512792-101512875 [+]
• hsa-mir-539: chr14: 101513658-101513735 [+]
• hsa-mir-889: chr14: 101514238-101514316 [+]
• hsa-mir-544a: chr14: 101514995-101515085 [+]
• hsa-mir-655: chr14: 101515887-101515983 [+]
• hsa-mir-487a: chr14: 101518783-101518862 [+]
• hsa-mir-382: chr14: 101520643-101520718 [+]
• hsa-mir-134: chr14: 101521024-101521096 [+]
• hsa-mir-668: chr14: 101521595-101521660 [+]
• hsa-mir-485: chr14: 101521756-101521828 [+]
• hsa-mir-323b: chr14: 101522556-101522637 [+]

Database links

• ENTREZGENE: 664613;MIR544
• HGNC: 32530;MIR544

Mature sequence hsa-miR-544a

• Accession: MIMAT0003164
• Previous IDs: hsa-miR-544
• Sequence: 55 - auucugcauuuuuagcaaguuc - 76
• Deep sequencing: 9 reads, 4 experiments
• Evidence: experimental; cloned [1-2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-544a
  • MICRORNA.ORG:hsa-miR-544a
  • MIRDB:hsa-miR-544a
  • RNA22-HSA:hsa-miR-544a
  • TARGETMINER:hsa-miR-544a
  • TARGETSCAN-VERT:hsa-miR-544

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).