Stem-loop sequence hsa-mir-539

Accession MI0003514
Symbol HGNC:MIR539
Description Homo sapiens miR-539 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
     ug          a      g    -    - uuu 
auacu  aggagaaauu uccuug ugug uucg c   a
|||||  |||||||||| |||||| |||| |||| |   u
uauga  uuuucuuuaa aggaac auac aagu g   u
     gu          c      -    u    a uau
Get sequence
Deep sequencing
1916 reads, 6 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr14: 101513658-101513735 [+]
sense
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
OTTHUMT00000414538 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; RP11-909M7.2-001; intron 1
ENST00000553692 ; MIR381HG-001; intron 1
Clustered miRNAs
< 10kb from hsa-mir-539
hsa-mir-376c chr14: 101506027-101506092 [+]
hsa-mir-376a-2 chr14: 101506406-101506485 [+]
hsa-mir-654 chr14: 101506556-101506636 [+]
hsa-mir-376b chr14: 101506773-101506872 [+]
hsa-mir-376a-1 chr14: 101507119-101507186 [+]
hsa-mir-300 chr14: 101507700-101507782 [+]
hsa-mir-1185-1 chr14: 101509314-101509399 [+]
hsa-mir-1185-2 chr14: 101510535-101510620 [+]
hsa-mir-381 chr14: 101512257-101512331 [+]
hsa-mir-487b chr14: 101512792-101512875 [+]
hsa-mir-539 chr14: 101513658-101513735 [+]
hsa-mir-889 chr14: 101514238-101514316 [+]
hsa-mir-544a chr14: 101514995-101515085 [+]
hsa-mir-655 chr14: 101515887-101515983 [+]
hsa-mir-487a chr14: 101518783-101518862 [+]
hsa-mir-382 chr14: 101520643-101520718 [+]
hsa-mir-134 chr14: 101521024-101521096 [+]
hsa-mir-668 chr14: 101521595-101521660 [+]
hsa-mir-485 chr14: 101521756-101521828 [+]
hsa-mir-323b chr14: 101522556-101522637 [+]
Database links

Mature sequence hsa-miR-539-5p

Accession MIMAT0003163
Previous IDs hsa-miR-539
Sequence

9 -  

ggagaaauuauccuuggugugu

 - 30

Get sequence
Deep sequencing 3 reads, 1 experiments
Evidence experimental; cloned [1,3], miRAP-cloned [2]
Predicted targets

Mature sequence hsa-miR-539-3p

Accession MIMAT0022705
Sequence

49 -  

aucauacaaggacaauuucuuu

 - 70

Get sequence
Deep sequencing 1913 reads, 6 experiments
Evidence not experimental
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:16973894 "Mouse microRNA profiles determined with a new and sensitive cloning method" Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H Nucleic Acids Res. 34:e115(2006).
3
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).