Stem-loop sequence mmu-mir-489

Accession

MI0003476 (change log)

Symbol

MGI:Mir489

Description

Mus musculus miR-489 stem-loop

Gene family

MIPF0000111; mir-489

Literature search

24 open access papers mention mmu-mir-489
(292 sentences)

Stem-loop

   ----ac  c g  -       c                  a  a  cu    aaag 
5'       ug u ca guggcag uugguugucauaugugug ug ca  uucu    u
         || | || ||||||| |||||||||||||||||| || ||  ||||     
3'       ac a gu cauuguc aaucgacgguauauacac ac gu  aaga    c
   ugaaca  a g  a       a                  c  a  --    ccuu 

Deep sequencing

156 reads, 0 reads per million, 21 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr6: 3721897-3722003 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000091195 ; Calcr-004; intron 1

  OTTMUST00000091196 ; Calcr-003; intron 4

  OTTMUST00000091182 ; Calcr-005; intron 4

  OTTMUST00000091197 ; Calcr-001; intron 4

  ENSMUST00000171396 ; Calcr-004; intron 1

  ENSMUST00000170266 ; Calcr-202; intron 2

  ENSMUST00000168592 ; Calcr-201; intron 2

  ENSMUST00000171613 ; Calcr-003; intron 4

  ENSMUST00000115622 ; Calcr-005; intron 4

  ENSMUST00000075644 ; Calcr-001; intron 4

Clustered miRNAs

< 10kb from mmu-mir-489

• mmu-mir-489: chr6: 3721897-3722003 [-]
• mmu-mir-653: chr6: 3721301-3721385 [-]

Database links

• EntrezGene:Mir489
• MGI:Mir489
• RNAcentral:URS000075D7D1_10090
• miRBase Tracker:MI0003476

Mature sequence mmu-miR-489-5p

• Accession: MIMAT0022704
• Sequence: 23 - ugucauaugugugaugacacuuucu - 47
• Deep sequencing: 2 reads, 1 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:mmu-miR-489-5p
  • miRDB:mmu-miR-489-5p

Mature sequence mmu-miR-489-3p

• Accession: MIMAT0003112
• Previous IDs: mmu-miR-489
• Sequence: 60 - aaugacaccacauauauggcagc - 82
• Deep sequencing: 151 reads, 19 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000059D38A_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-489-3p
  • miRDB:mmu-miR-489-3p
  • microrna.org:mmu-miR-489-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).