Stem-loop sequence fru-mir-29a-2

Accession

MI0003403 (change log)

Description

Fugu rubripes miR-29a-2 stem-loop

Gene family

MIPF0000009; mir-29

Stem-loop

   gaagacagucuuggacucccuucccc   -c     caaaag            uuc       g    uc   u 
5'                           guc  uccac      augacugauuuc   uggugcu agag  ggc g
                             |||  |||||      ||||||||||||   ||||||| ||||  |||  
3'                           uag  gggug      uauuggcuaaag   accacga ucuu  ccg c
   ----------------------uaca   cu     acaaaa            uuu       -    --   a 

Confidence

Annotation confidence: not enough data

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Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

• Coordinates (FUGU5; GCA_000180615.2): HE591818.1: 89490-89615 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from fru-mir-29a-2

• fru-mir-29b-1: HE591818.1: 89646-89722 [-]
• fru-mir-29a-2: HE591818.1: 89490-89615 [-]

Database links

• miRBase Tracker:MI0003403

Mature sequence fru-miR-29a

• Accession: MIMAT0003053
• Sequence: 84 - uagcaccauuugaaaucgguua - 105
• Evidence: by similarity; MI0001938