Stem-loop sequence hsa-mir-514a-1

Accession

MI0003198

Previous IDs

hsa-mir-514-1

Symbol

HGNC:MIR514-1

Description

Homo sapiens miR-514a-1 stem-loop

Gene family

MIPF0000130; mir-506

Stem-loop

aac    u   -    g   c      -    g    a      u  aua 
   augu guc ugug uac cuacuc ugga agug caauca gu   a
   |||| ||| |||| ||| |||||| |||| |||| |||||| ||    
   ugca cag acgc aug gaugag gucu ucac guuagu ua   u
gca    -   u    a   a      u    -    a      u  aau 

Deep sequencing

2679 reads, 18 experiments

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCh37.p5): chrX: 146360765-146360862 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-514a-1

• hsa-mir-514a-3: chrX: 146366159-146366246 [-]
• hsa-mir-514a-2: chrX: 146363461-146363548 [-]
• hsa-mir-514a-1: chrX: 146360765-146360862 [-]
• hsa-mir-510: chrX: 146353853-146353926 [-]

Database links

• EMBL: AY882310;AY882310
• ENTREZGENE: 574516;MIR514-1
• HGNC: 32148;MIR514-1

Mature sequence hsa-miR-514a-5p

• Accession: MIMAT0022702
• Sequence: 22 - uacucuggagagugacaaucaug - 44
• Deep sequencing: 3368 reads, 16 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-514a-5p
  • MIRDB:hsa-miR-514a-5p
  • TARGETMINER:hsa-miR-514a-5p

Mature sequence hsa-miR-514a-3p

• Accession: MIMAT0002883
• Previous IDs: hsa-miR-514
• Sequence: 59 - auugacacuucugugaguaga - 79
• Deep sequencing: 4665 reads, 11 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-514a-3p
  • MICRORNA.ORG:hsa-miR-514a-3p
  • MIRDB:hsa-miR-514a-3p
  • RNA22-HSA:hsa-miR-514a-3p
  • TARGETMINER:hsa-miR-514a-3p
  • TARGETSCAN-VERT:hsa-miR-514

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).