Stem-loop sequence hsa-mir-506

Accession

MI0003193

Symbol

HGNC:MIR506

Description

Homo sapiens miR-506 stem-loop

Gene family

MIPF0000130; mir-506

Stem-loop

        ---caucag    acua  ug  g   c          a     ua    a     u 
gccaccac         ccau    ug  ua ugc uuauucagga ggugu  cuua uagau a
||||||||         ||||    ||  || ||| |||||||||| |||||  |||| |||||  
cgguggug         ggua    ac  gu aug gaugagucuu ccacg  gaau guuua a
        uuuacaaca    --ca  gu  a   a          c     --    -     u 

Deep sequencing

1065 reads, 11 experiments

Genome context

• Coordinates (GRCh37.p5): chrX: 146312238-146312361 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-506

• hsa-mir-508: chrX: 146318431-146318545 [-]
• hsa-mir-507: chrX: 146312502-146312595 [-]
• hsa-mir-506: chrX: 146312238-146312361 [-]
• hsa-mir-513a-2: chrX: 146307344-146307470 [-]

Database links

• EMBL: AY882284;AY882284
• ENTREZGENE: 574511;MIR506
• HGNC: 32143;MIR506

Mature sequence hsa-miR-506-5p

• Accession: MIMAT0022701
• Sequence: 35 - uauucaggaagguguuacuuaa - 56
• Deep sequencing: 521 reads, 10 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-506-5p
  • MIRDB:hsa-miR-506-5p
  • TARGETMINER:hsa-miR-506-5p

Mature sequence hsa-miR-506-3p

• Accession: MIMAT0002878
• Previous IDs: hsa-miR-506
• Sequence: 71 - uaaggcacccuucugaguaga - 91
• Deep sequencing: 544 reads, 10 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-506-3p
  • MICRORNA.ORG:hsa-miR-506-3p
  • MIRDB:hsa-miR-506-3p
  • RNA22-HSA:hsa-miR-506-3p
  • TARGETMINER:hsa-miR-506-3p
  • TARGETSCAN-VERT:hsa-miR-506

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).