Stem-loop sequence hsa-mir-502

Accession MI0003186
Symbol HGNC:MIR502
Description Homo sapiens miR-502 stem-loop
Gene family MIPF0000139; mir-500
Stem-loop 
u             -         uau ug     uag   ugg 
 gcucccccucucu aauccuugc   c  ggugc   ugc   c
 ||||||||||||| |||||||||   |  |||||   |||   u
 cgagggggagaga uuaggaacg   g  ccacg   acg   c
u             c         --- gu     -ua   uaa
Get sequence
Deep sequencing
4606 reads, 28 experiments
Comments

Extensive cloning studies suggest that the 3' product may be the predominant one [2].

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chrX: 49779206-49779291 [+]
sense
OTTHUMT00000056542 ; CLCN5-001; intron 3
OTTHUMT00000056543 ; CLCN5-002; intron 3
OTTHUMT00000109349 ; CLCN5-005; intron 3
OTTHUMT00000056542 ; CLCN5-001; intron 3
OTTHUMT00000056543 ; CLCN5-002; intron 3
OTTHUMT00000109349 ; CLCN5-005; intron 3
OTTHUMT00000056542 ; CLCN5-001; intron 3
OTTHUMT00000056543 ; CLCN5-002; intron 3
OTTHUMT00000109349 ; CLCN5-005; intron 3
ENST00000376088 ; CLCN5-001; intron 3
ENST00000376091 ; CLCN5-002; intron 3
ENST00000482218 ; CLCN5-005; intron 3
ENST00000450422 ; CLCN5-201; intron 3
ENST00000376088 ; CLCN5-001; intron 3
ENST00000376091 ; CLCN5-002; intron 3
ENST00000482218 ; CLCN5-005; intron 3
ENST00000450422 ; CLCN5-201; intron 3
ENST00000376088 ; CLCN5-001; intron 3
ENST00000376091 ; CLCN5-002; intron 3
ENST00000482218 ; CLCN5-005; intron 3
Clustered miRNAs
< 10kb from hsa-mir-502
hsa-mir-500a chrX: 49773039-49773122 [+]
hsa-mir-362 chrX: 49773572-49773636 [+]
hsa-mir-501 chrX: 49774330-49774413 [+]
hsa-mir-500b chrX: 49775280-49775358 [+]
hsa-mir-660 chrX: 49777849-49777945 [+]
hsa-mir-502 chrX: 49779206-49779291 [+]
Database links

Mature sequence hsa-miR-502-5p

Accession MIMAT0002873
Previous IDs hsa-miR-502
Sequence

16 -  

auccuugcuaucugggugcua

 - 36

Get sequence
Deep sequencing 42 reads, 13 experiments
Evidence experimental; array-cloned [1]
Validated targets
Predicted targets

Mature sequence hsa-miR-502-3p

Accession MIMAT0004775
Sequence

52 -  

aaugcaccugggcaaggauuca

 - 73

Get sequence
Deep sequencing 4562 reads, 22 experiments
Evidence experimental; cloned [2]
Predicted targets

References

1
PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).