Stem-loop sequence hsa-mir-527

Accession MI0003179
Symbol HGNC:MIR527
Description Homo sapiens miR-527 stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
             --cug           c      guug  u 
ucucaagcuguga     caaagggaagc cuuucu    uc a
|||||||||||||     ||||||||||| ||||||    || a
agaguuuggcauu     guuucccuucg gaaaga    ag a
             aagug           u      --aa  a
Get sequence
Deep sequencing
11 reads, 4 experiments
Comments

miR-527 cloned in [2] has a 1 nt 3' extension (A), which is incompatible with the genome sequence.

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr19: 54257272-54257356 [+]
intergenic
Clustered miRNAs
< 10kb from hsa-mir-527
hsa-mir-521-1 chr19: 54251890-54251976 [+]
hsa-mir-522 chr19: 54254465-54254551 [+]
hsa-mir-519a-1 chr19: 54255651-54255735 [+]
hsa-mir-527 chr19: 54257272-54257356 [+]
hsa-mir-516a-1 chr19: 54259995-54260084 [+]
hsa-mir-1283-2 chr19: 54261486-54261572 [+]
hsa-mir-516a-2 chr19: 54264387-54264476 [+]
hsa-mir-519a-2 chr19: 54265598-54265684 [+]
Database links

Mature sequence hsa-miR-527

Accession MIMAT0002862
Sequence

14 -  

cugcaaagggaagcccuuuc

 - 33

Get sequence
Deep sequencing 10 reads, 3 experiments
Evidence experimental; array-cloned [1], cloned [2]
Predicted targets

References

1
PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).