Stem-loop sequence hsa-mir-520h

Accession

MI0003175

Symbol

HGNC:MIR520H

Description

Homo sapiens miR-520h stem-loop

Gene family

MIPF0000020; mir-515

Stem-loop

     u  u     cc        -        uc     guugu 
uccca gc gugac  ucuagagg aagcacuu  uguuu     c
||||| || |||||  |||||||| ||||||||  |||||     u
agggu ug cauug  agauuucc uucgugaa  acaaa     g
     u  u     --        c        --     aaaga 

Deep sequencing

22 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 54245766-54245853 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-520h

• hsa-mir-518d: chr19: 54238131-54238217 [+]
• hsa-mir-516b-1: chr19: 54240099-54240188 [+]
• hsa-mir-518a-2: chr19: 54242587-54242673 [+]
• hsa-mir-517c: chr19: 54244567-54244661 [+]
• hsa-mir-520h: chr19: 54245766-54245853 [+]
• hsa-mir-521-1: chr19: 54251890-54251976 [+]
• hsa-mir-522: chr19: 54254465-54254551 [+]
• hsa-mir-519a-1: chr19: 54255651-54255735 [+]

Database links

• EMBL: AY785928;AY785928
• EMBL: AY785945;AY785945
• ENTREZGENE: 574493;MIR520H
• HGNC: 32125;MIR520H

Mature sequence hsa-miR-520h

• Accession: MIMAT0002867
• Sequence: 55 - acaaagugcuucccuuuagagu - 76
• Deep sequencing: 22 reads, 4 experiments
• Evidence: experimental; array-cloned [1]
• Validated targets:
  • MIRECORDS:hsa-miR-520h
  • MIRTARBASE:hsa-miR-520h
  • TARBASE:hsa-miR-520h
• Predicted targets:
  • DIANA-MICROT:hsa-miR-520h
  • MICRORNA.ORG:hsa-miR-520h
  • MIRDB:hsa-miR-520h
  • RNA22-HSA:hsa-miR-520h
  • TARGETMINER:hsa-miR-520h
  • TARGETSCAN-VERT:hsa-miR-520h

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).