Stem-loop sequence hsa-mir-517c

Accession

MI0003174

Symbol

HGNC:MIR517C

Description

Homo sapiens miR-517c stem-loop

Gene family

MIPF0000020; mir-515

Stem-loop

gaaga              c       u   a    u    guugu 
     ucucaggcagugac cucuaga gga gcac gucu     c
     |||||||||||||| ||||||| ||| |||| ||||     u
     agaguuugucauug gagauuu ccu cgug uaga     a
cuaaa              u       u   a    c    aaaga 

Deep sequencing

30 reads, 6 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 54244567-54244661 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-517c

• hsa-mir-518d: chr19: 54238131-54238217 [+]
• hsa-mir-516b-1: chr19: 54240099-54240188 [+]
• hsa-mir-518a-2: chr19: 54242587-54242673 [+]
• hsa-mir-517c: chr19: 54244567-54244661 [+]
• hsa-mir-520h: chr19: 54245766-54245853 [+]
• hsa-mir-521-1: chr19: 54251890-54251976 [+]
• hsa-mir-522: chr19: 54254465-54254551 [+]

Database links

• EMBL: AY785929;AY785929
• EMBL: AY882296;AY882296
• ENTREZGENE: 574492;MIR517C
• HGNC: 32124;MIR517C

Mature sequence hsa-miR-517-5p

• Accession: MIMAT0002851
• Previous IDs: hsa-miR-517*
• Sequence: 20 - ccucuagauggaagcacugucu - 41
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-517-5p
  • MICRORNA.ORG:hsa-miR-517-5p
  • MIRDB:hsa-miR-517-5p
  • RNA22-HSA:hsa-miR-517-5p
  • TARGETMINER:hsa-miR-517-5p

Mature sequence hsa-miR-517c-3p

• Accession: MIMAT0002866
• Previous IDs: hsa-miR-517c
• Sequence: 57 - aucgugcauccuuuuagagugu - 78
• Deep sequencing: 27 reads, 5 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-517c-3p
  • MICRORNA.ORG:hsa-miR-517c-3p
  • MIRDB:hsa-miR-517c-3p
  • RNA22-HSA:hsa-miR-517c-3p
  • TARGETMINER:hsa-miR-517c-3p
  • TARGETSCAN-VERT:hsa-miR-517c

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).