Stem-loop sequence hsa-mir-516b-1

Accession MI0003172
Previous IDs hsa-mir-516-4
Symbol HGNC:MIR516B1
Description Homo sapiens miR-516b-1 stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
       cu      a        uaa            g    g 
ucucagg  gugacc ucuggagg   gaagcacuuucu uuuu u
|||||||  |||||| ||||||||   |||||||||||| |||| g
agaguuu  cauugg agacuuuc   cuucgugaaaga aaga a
       cu      g        ---            a    a
Get sequence
Deep sequencing
140 reads, 3 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr19: 54240099-54240188 [+]
intergenic
Clustered miRNAs
< 10kb from hsa-mir-516b-1
hsa-mir-526a-2 chr19: 54230176-54230240 [+]
hsa-mir-518e chr19: 54233092-54233179 [+]
hsa-mir-518a-1 chr19: 54234260-54234344 [+]
hsa-mir-518d chr19: 54238131-54238217 [+]
hsa-mir-516b-1 chr19: 54240099-54240188 [+]
hsa-mir-518a-2 chr19: 54242587-54242673 [+]
hsa-mir-517c chr19: 54244567-54244661 [+]
hsa-mir-520h chr19: 54245766-54245853 [+]
Database links

Mature sequence hsa-miR-516b-5p

Accession MIMAT0002859
Previous IDs hsa-miR-516-5p;hsa-miR-516b
Sequence

16 -  

aucuggagguaagaagcacuuu

 - 37

Get sequence
Deep sequencing 276 reads, 2 experiments
Evidence experimental; array-cloned [1], cloned [2]
Predicted targets

Mature sequence hsa-miR-516b-3p

Accession MIMAT0002860
Previous IDs hsa-miR-516-3p;hsa-miR-516b*;hsa-miR-516a-3p;hsa-miR-516b*;hsa-miR-516a-3p;hsa-miR-516b*
Sequence

61 -  

ugcuuccuuucagagggu

 - 78

Get sequence
Deep sequencing 4 reads, 1 experiments
Evidence experimental; array-cloned [1]
Predicted targets

References

1
PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).