Stem-loop sequence hsa-mir-518e

Accession

MI0003169

Symbol

HGNC:MIR518E

Description

Homo sapiens miR-518e stem-loop

Gene family

MIPF0000020; mir-515

Stem-loop

      -  ug    c    ag               guuggc 
ucucag gc  ugac cucu  agggaagcgcuuucu      u
|||||| ||  |||| ||||  |||||||||||||||      a
agaguu cg  auug gaga  ucccuucgcgaaaga      a
      u  ca    u    cu               aaagaa 

Deep sequencing

11 reads, 5 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 54233092-54233179 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-518e

• hsa-mir-520d: chr19: 54223350-54223436 [+]
• hsa-mir-517b: chr19: 54224330-54224396 [+]
• hsa-mir-520g: chr19: 54225420-54225509 [+]
• hsa-mir-516b-2: chr19: 54228696-54228780 [+]
• hsa-mir-526a-2: chr19: 54230176-54230240 [+]
• hsa-mir-518e: chr19: 54233092-54233179 [+]
• hsa-mir-518a-1: chr19: 54234260-54234344 [+]
• hsa-mir-518d: chr19: 54238131-54238217 [+]
• hsa-mir-516b-1: chr19: 54240099-54240188 [+]
• hsa-mir-518a-2: chr19: 54242587-54242673 [+]

Database links

• EMBL: AY785923;AY785923
• EMBL: AY882326;AY882326
• ENTREZGENE: 574487;MIR518E
• HGNC: 32119;MIR518E

Mature sequence hsa-miR-518e-5p

• Accession: MIMAT0005450
• Previous IDs: hsa-miR-518e*
• Sequence: 16 - cucuagagggaagcgcuuucug - 37
• Deep sequencing: 8 reads, 2 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-518e-5p
  • MICRORNA.ORG:hsa-miR-518e-5p
  • MIRDB:hsa-miR-518e-5p
  • RNA22-HSA:hsa-miR-518e-5p
  • TARGETMINER:hsa-miR-518e-5p

Mature sequence hsa-miR-518e-3p

• Accession: MIMAT0002861
• Previous IDs: hsa-miR-518e
• Sequence: 54 - aaagcgcuucccuucagagug - 74
• Deep sequencing: 3 reads, 3 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-518e-3p
  • MICRORNA.ORG:hsa-miR-518e-3p
  • MIRDB:hsa-miR-518e-3p
  • RNA22-HSA:hsa-miR-518e-3p
  • TARGETMINER:hsa-miR-518e-3p
  • TARGETSCAN-VERT:hsa-miR-518e

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).