Stem-loop sequence hsa-mir-524

Accession

MI0003160

Symbol

HGNC:MIR524

Description

Homo sapiens miR-524 stem-loop

Gene family

MIPF0000020; mir-515

Stem-loop

     u        c  a           a      cuug     
ucuca gcugugac cu caaagggaagc cuuucu    ucca 
||||| |||||||| || ||||||||||| ||||||    ||| a
agagu uggcauug ga guuucccuucg ggaaga    agga 
     u        u  g           c      --aa     

Deep sequencing

24 reads, 5 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 54214256-54214342 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-524

• hsa-mir-520b: chr19: 54204481-54204541 [+]
• hsa-mir-518b: chr19: 54205991-54206073 [+]
• hsa-mir-526a-1: chr19: 54209506-54209590 [+]
• hsa-mir-520c: chr19: 54210707-54210793 [+]
• hsa-mir-518c: chr19: 54211989-54212089 [+]
• hsa-mir-524: chr19: 54214256-54214342 [+]
• hsa-mir-517a: chr19: 54215522-54215608 [+]
• hsa-mir-519d: chr19: 54216601-54216688 [+]
• hsa-mir-521-2: chr19: 54219848-54219934 [+]
• hsa-mir-520d: chr19: 54223350-54223436 [+]

Database links

• EMBL: AY785918;AY785918
• EMBL: AY882291;AY882291
• ENTREZGENE: 574478;MIR524
• HGNC: 32110;MIR524

Mature sequence hsa-miR-524-5p

• Accession: MIMAT0002849
• Previous IDs: hsa-miR-524*
• Sequence: 16 - cuacaaagggaagcacuuucuc - 37
• Deep sequencing: 21 reads, 5 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-524-5p
  • MICRORNA.ORG:hsa-miR-524-5p
  • MIRDB:hsa-miR-524-5p
  • RNA22-HSA:hsa-miR-524-5p
  • TARGETMINER:hsa-miR-524-5p
  • TARGETSCAN-VERT:hsa-miR-524-5p

Mature sequence hsa-miR-524-3p

• Accession: MIMAT0002850
• Previous IDs: hsa-miR-524
• Sequence: 53 - gaaggcgcuucccuuuggagu - 73
• Deep sequencing: 3 reads, 1 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-524-3p
  • MICRORNA.ORG:hsa-miR-524-3p
  • MIRDB:hsa-miR-524-3p
  • RNA22-HSA:hsa-miR-524-3p
  • TARGETMINER:hsa-miR-524-3p
  • TARGETSCAN-VERT:hsa-miR-524-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).