Stem-loop sequence hsa-mir-512-1

Accession

MI0003140

Symbol

HGNC:MIR512-1

Description

Homo sapiens miR-512-1 stem-loop

Gene family

MIPF0000130; mir-506

Stem-loop

u       ug   ca      cu   g       ----    g 
 cucaguc  ugg  cucagc  uga ggcacuu    ucug u
 |||||||  |||  ||||||  ||| |||||||    ||||  
 gagucag  acc  gagucg  acu ucgugaa    agac g
g       ua   ug      au   g       agua    c 

Deep sequencing

21 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr19: 54169933-54170016 [+]
• Overlapping transcripts:

  sense

  ENST00000384913 ; MIR512-1-201; exon 1

  ENST00000384913 ; MIR512-1-201; exon 1

  ENST00000384913 ; MIR512-1-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-512-1

• hsa-mir-512-1: chr19: 54169933-54170016 [+]
• hsa-mir-512-2: chr19: 54172411-54172508 [+]
• hsa-mir-1323: chr19: 54175222-54175294 [+]
• hsa-mir-498: chr19: 54177451-54177574 [+]
• hsa-mir-520e: chr19: 54178965-54179051 [+]

Database links

• EMBL: AY882301;AY882301
• EMBL: AY882302;AY882302
• ENTREZGENE: 574458;MIR512-1
• HGNC: 32090;MIR512-1

Mature sequence hsa-miR-512-5p

• Accession: MIMAT0002822
• Sequence: 14 - cacucagccuugagggcacuuuc - 36
• Deep sequencing: 10 reads, 3 experiments
• Evidence: experimental; array-cloned [1]
• Validated targets:
  • MIRTARBASE:hsa-miR-512-5p
  • TARBASE:hsa-miR-512-5p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-512-5p
  • MICRORNA.ORG:hsa-miR-512-5p
  • MIRDB:hsa-miR-512-5p
  • RNA22-HSA:hsa-miR-512-5p
  • TARGETMINER:hsa-miR-512-5p
  • TARGETSCAN-VERT:hsa-miR-512-5p

Mature sequence hsa-miR-512-3p

• Accession: MIMAT0002823
• Sequence: 51 - aagugcugucauagcugagguc - 72
• Deep sequencing: 32 reads, 2 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Validated targets:
  • MIRECORDS:hsa-miR-512-3p
  • TARBASE:hsa-miR-512-3p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-512-3p
  • MICRORNA.ORG:hsa-miR-512-3p
  • MIRDB:hsa-miR-512-3p
  • RNA22-HSA:hsa-miR-512-3p
  • TARGETMINER:hsa-miR-512-3p
  • TARGETSCAN-VERT:hsa-miR-512-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).