Stem-loop sequence hsa-mir-496

Accession MI0003136
Symbol HGNC:MIR496
Description Homo sapiens miR-496 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
      -----uca     u    u        u     gu         uua 
cccaag        gguac cgaa ggagguug ccaug  guguucauu   u
||||||        ||||| |||| |||||||| |||||  |||||||||    
ggguuc        ucaug gcuu ccucuaac gguac  uaugaguag   u
      uucuuaac     -    u        c     au         uau
Get sequence
Deep sequencing
40 reads, 3 experiments
Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations. miR-496 cloned in [2] has a 1 nt 3' extension (U), which is incompatible with the genome sequence.

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr14: 101526910-101527011 [+]
intergenic
Clustered miRNAs
< 10kb from hsa-mir-496
hsa-mir-487a chr14: 101518783-101518862 [+]
hsa-mir-382 chr14: 101520643-101520718 [+]
hsa-mir-134 chr14: 101521024-101521096 [+]
hsa-mir-668 chr14: 101521595-101521660 [+]
hsa-mir-485 chr14: 101521756-101521828 [+]
hsa-mir-323b chr14: 101522556-101522637 [+]
hsa-mir-154 chr14: 101526092-101526175 [+]
hsa-mir-496 chr14: 101526910-101527011 [+]
hsa-mir-377 chr14: 101528387-101528455 [+]
hsa-mir-541 chr14: 101530832-101530915 [+]
hsa-mir-409 chr14: 101531637-101531715 [+]
hsa-mir-412 chr14: 101531784-101531874 [+]
hsa-mir-369 chr14: 101531935-101532004 [+]
hsa-mir-410 chr14: 101532249-101532328 [+]
hsa-mir-656 chr14: 101533061-101533138 [+]
Database links

Mature sequence hsa-miR-496

Accession MIMAT0002818
Sequence

56 -  

ugaguauuacauggccaaucuc

 - 77

Get sequence
Deep sequencing 32 reads, 1 experiments
Evidence experimental; array-cloned [1], cloned [2]
Predicted targets

References

1
PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).