Stem-loop sequence hsa-mir-432

Accession

MI0003133

Symbol

HGNC:MIR432

Description

Homo sapiens miR-432 stem-loop

Gene family

MIPF0000211; mir-432

Stem-loop

u  -  c       u u     ua       g     a   u -  uu 
 ga cu cuccagg c uggag  ggucauu ggugg ucc c ua  u
 || || ||||||| | |||||  ||||||| ||||| ||| | ||   
 cu ga gagguuc g accuc  ucgguag ucacc ggg g au  c
a  a  u       u u     -c       g     -   u c  uc 

Deep sequencing

1997 reads, 10 experiments

Genome context

• Coordinates (GRCh37.p5): chr14: 101350820-101350913 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000395127 ; RTL1-001; exon 1

  OTTHUMT00000395127 ; RTL1-001; exon 1

  OTTHUMT00000395127 ; RTL1-001; exon 1

  ENST00000534062 ; RTL1-001; exon 1

  ENST00000534062 ; RTL1-001; exon 1

  ENST00000534062 ; RTL1-001; exon 1

Clustered miRNAs

< 10kb from hsa-mir-432

• hsa-mir-337: chr14: 101340830-101340922 [+]
• hsa-mir-665: chr14: 101341370-101341441 [+]
• hsa-mir-431: chr14: 101347344-101347457 [+]
• hsa-mir-433: chr14: 101348223-101348315 [+]
• hsa-mir-127: chr14: 101349316-101349412 [+]
• hsa-mir-432: chr14: 101350820-101350913 [+]
• hsa-mir-136: chr14: 101351039-101351120 [+]

Database links

• EMBL: AY785934;AY785934
• ENTREZGENE: 574451;MIR432
• HGNC: 32083;MIR432

Mature sequence hsa-miR-432-5p

• Accession: MIMAT0002814
• Previous IDs: hsa-miR-432
• Sequence: 14 - ucuuggaguaggucauugggugg - 36
• Deep sequencing: 1997 reads, 10 experiments
• Evidence: experimental; array-cloned [1], cloned [2-3]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-432-5p
  • MICRORNA.ORG:hsa-miR-432-5p
  • MIRDB:hsa-miR-432-5p
  • RNA22-HSA:hsa-miR-432-5p
  • TARGETMINER:hsa-miR-432-5p
  • TARGETSCAN-VERT:hsa-miR-432

Mature sequence hsa-miR-432-3p

• Accession: MIMAT0002815
• Previous IDs: hsa-miR-432*
• Sequence: 62 - cuggauggcuccuccaugucu - 82
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-432-3p
  • MICRORNA.ORG:hsa-miR-432-3p
  • MIRDB:hsa-miR-432-3p
  • RNA22-HSA:hsa-miR-432-3p
  • TARGETMINER:hsa-miR-432-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).