Stem-loop sequence ptr-mir-93

AccessionMI0003071 (change log)
DescriptionPan troglodytes miR-93 stem-loop
Gene family MIPF0000001; mir-17
Stem-loop
             -ca       -     u    g   ug  au 
5' cugggggcuc   aagugcu guucg gcag uag  ug  u
   ||||||||||   ||||||| ||||| |||| |||  ||   
3' ggcccccgag   uucacga cgagu cguc auc  gc  a
             ccc       u     -    -   ca  cc 
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Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (Pan_tro3.0; GCA_000001515.5) Overlapping transcripts
chr7: 103151022-103151101 [-]
sense
ENSPTRT00000036049 ; MCM7-201; intron 13
Clustered miRNAs
< 10kb from ptr-mir-93
ptr-mir-106bchr7: 103151247-103151328 [-]
ptr-mir-93chr7: 103151022-103151101 [-]
ptr-mir-25chr7: 103150814-103150897 [-]
Database links

Mature sequence ptr-miR-93

Accession MIMAT0002770
Sequence

12 - 

aaagugcuguucgugcagguag

 - 33

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Evidence by similarity; MI0000095
Predicted targets

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).