Stem-loop sequence mml-mir-17

AccessionMI0003001 (change log)
DescriptionMacaca mulatta miR-17 stem-loop
Gene family MIPF0000001; mir-17
Literature search

4 open access papers mention mml-mir-17
(6 sentences)

Stem-loop
       ga       -ca        a  g     g   -  au 
5' guca  auaaugu   aagugcuu ca ugcag uag ug  a
   ||||  |||||||   |||||||| || ||||| ||| ||  u
3' cagu  uauuacg   uucacgga gu acguc auc ac  g
       gg       aug        a  g     -   u  gu 
Get sequence
Deep sequencing
41064 reads, 300 reads per million, 9 experiments
Confidence Annotation confidence: high
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [2]. The expression of this mature miRNA was validated by Miska et al [1].

Genome context
Coordinates (Mmul_8.0.1; GCA_000772875.3) Overlapping transcripts
chr17: 73096107-73096190 [+]
sense
ENSMMUT00000015929 ; GPC5-201; intron 1
Clustered miRNAs
< 10kb from mml-mir-17
mml-mir-17chr17: 73096107-73096190 [+]
mml-mir-18achr17: 73096253-73096323 [+]
mml-mir-19achr17: 73096393-73096474 [+]
mml-mir-20achr17: 73096567-73096637 [+]
mml-mir-19b-1chr17: 73096694-73096780 [+]
mml-mir-92a-1chr17: 73096816-73096893 [+]
Database links

Mature sequence mml-miR-17-5p

Accession MIMAT0002700
Sequence

14 - 

caaagugcuuacagugcagguagu

 - 37

Get sequence
Deep sequencing35320 reads, 9 experiments
Evidence experimental; cloned [1]
Predicted targets

Mature sequence mml-miR-17-3p

Accession MIMAT0002701
Sequence

51 - 

acugcagugaaggcacuugu

 - 70

Get sequence
Deep sequencing5744 reads, 9 experiments
Evidence experimental; cloned [1]
Predicted targets

References

1
PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
2
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).