Stem-loop sequence ppa-mir-19a

AccessionMI0002985 (change log)
DescriptionPan paniscus miR-19a stem-loop
Gene family MIPF0000011; mir-19
Stem-loop
       u  u                 --      ---    ag 
5' gcag cc cuguuaguuuugcauag  uugcac   uaca  a
   |||| || |||||||||||||||||  ||||||   ||||  a
3' cguc gg gguagucaaaacguauc  aacgug   augu  g
       c  u                 ua      uug    aa 
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Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (panpan1.1; GCA_000258655.2) Overlapping transcripts
chr13: 91707614-91707695 [+]
intergenic
Clustered miRNAs
< 10kb from ppa-mir-19a
ppa-mir-17chr13: 91707328-91707411 [+]
ppa-mir-18chr13: 91707474-91707544 [+]
ppa-mir-19achr13: 91707614-91707695 [+]
ppa-mir-20chr13: 91707788-91707858 [+]
ppa-mir-19b-1chr13: 91707915-91708001 [+]
ppa-mir-92a-1chr13: 91708037-91708114 [+]
Database links

Mature sequence ppa-miR-19a

Accession MIMAT0002682
Sequence

49 - 

ugugcaaaucuaugcaaaacuga

 - 71

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Evidence by similarity; MI0000073

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).