Stem-loop sequence ppa-mir-18

AccessionMI0002984 (change log)
DescriptionPan paniscus miR-18 stem-loop
Gene family MIPF0000001; mir-17
Stem-loop
   u   cu    u   uc   u    a   -  aa u 
5'  guu  aagg gca  uag gcag uag ug  g a
    |||  |||| |||  ||| |||| ||| ||  | g
3'  cgg  uucc cgu  auc cguc auc ac  u a
   a   uc    u   ga   c    -   u  ga u 
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Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (panpan1.1; GCA_000258655.2) Overlapping transcripts
chr13: 91707474-91707544 [+]
intergenic
Clustered miRNAs
< 10kb from ppa-mir-18
ppa-mir-17chr13: 91707328-91707411 [+]
ppa-mir-18chr13: 91707474-91707544 [+]
ppa-mir-19achr13: 91707614-91707695 [+]
ppa-mir-20chr13: 91707788-91707858 [+]
ppa-mir-19b-1chr13: 91707915-91708001 [+]
ppa-mir-92a-1chr13: 91708037-91708114 [+]
Database links

Mature sequence ppa-miR-18

Accession MIMAT0002681
Sequence

6 - 

uaaggugcaucuagugcagaua

 - 27

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Evidence by similarity; MI0000072

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).