Stem-loop sequence ppy-mir-181a-1

AccessionMI0002935 (change log)
Previous IDsppy-mir-213
DescriptionPongo pygmaeus miR-181a-1 stem-loop
Gene family MIPF0000007; mir-181
Stem-loop
   -u    -uu   -    -   uc  u a   u      cu       a    g  au 
5'   gagu   uga gguu gcu  ag g aca ucaacg  gucggug guuu ga  u
     ||||   ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
3'   cuca   acu ccaa cgg  uc c ugu aguugc  cagcuac caaa cu  a
   ac    ucu   a    u   ua  c a   u      --       -    a  aa 
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Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (P_pygmaeus_2.0.2; GCF_000001545.4) Overlapping transcripts
chr1: 51520574-51520683 [+]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-181a-1
ppy-mir-181a-1chr1: 51520574-51520683 [+]
ppy-mir-181bchr1: 51520745-51520854 [+]
Database links

Mature sequence ppy-miR-181a-5p

Accession MIMAT0002626
Previous IDsppy-miR-181a
Sequence

24 - 

aacauucaacgcugucggugagu

 - 46

Get sequence
Evidence not experimental

Mature sequence ppy-miR-181a-3p

Accession MIMAT0002627
Previous IDsppy-miR-213;ppy-miR-181a*
Sequence

64 - 

accaucgaccguugauuguacc

 - 85

Get sequence
Evidence by similarity; MI0000289

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).