Stem-loop sequence ppy-mir-29b-1

AccessionMI0002726 (change log)
DescriptionPongo pygmaeus miR-29b-1 stem-loop
Gene family MIPF0000009; mir-29
Stem-loop
   -         -          u      gu      uuaaa 
5'  cuucaggaa gcugguuuca auggug  uuagau     u
    ||||||||| |||||||||| ||||||  ||||||     a
3'  gggguucuu ugacuaaagu uaccac  gaucug     g
   g         g          u      --      uuagu 
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Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (P_pygmaeus_2.0.2; GCF_000001545.4) Overlapping transcripts
chr7: 127859566-127859646 [-]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-29b-1
ppy-mir-29b-1chr7: 127859566-127859646 [-]
ppy-mir-29achr7: 127858405-127858468 [-]
Database links

Mature sequence ppy-miR-29b

Accession MIMAT0002434
Sequence

51 - 

uagcaccauuugaaaucagu

 - 70

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Evidence by similarity; MI0000107

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).