Stem-loop sequence mml-mir-33a

AccessionMI0002684 (change log)
Previous IDsmml-mir-33
DescriptionMacaca mulatta miR-33a stem-loop
Gene family MIPF0000070; mir-33
Stem-loop 
      cg         a uu          uucu  u 
5' cug  gugcauugu g  gcauugcaug    gg g
   |||  ||||||||| |  ||||||||||    || g
3' gac  uacgugaca c  uguaacguac    cc u
      au         c uu          ----  a
Get sequence
Deep sequencing
17468 reads, 44.4 reads per million, 9 experiments
Confidence Annotation confidence: high
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [2]. The expression of this mature miRNA was validated by Miska et al [1].

Genome context
Coordinates (Mmul_8.0.1; GCA_000772875.3) Overlapping transcripts
chr10: 83990729-83990797 [+]
intergenic
Database links

Mature sequence mml-miR-33a

Accession MIMAT0002392
Previous IDsmml-miR-33
Sequence

6 -  

gugcauuguaguugcauug

 - 24

Get sequence
Deep sequencing17330 reads, 9 experiments
Evidence experimental; cloned [1]
Database links
Predicted targets

References

1
PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
2
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).