Stem-loop sequence mml-mir-127

AccessionMI0002582 (change log)
DescriptionMacaca mulatta miR-127 stem-loop
Gene family MIPF0000080; mir-127
Stem-loop 
   -----ugu   ca   ucu      ugcug         g  c      --  a 
5'         gau  cug   ccagcc     aagcucaga gg ucugau  uc g
           |||  |||   ||||||     ||||||||| || ||||||  || a
3'         cug  ggc   ggucgg     uucgagucu cc aggcua  ag a
   cuacuccu   aa   --u      -----         g  u      cu  a
Get sequence
Deep sequencing
273107 reads, 1.33e+03 reads per million, 9 experiments
Confidence Annotation confidence: high
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (Mmul_8.0.1; GCA_000772875.3) Overlapping transcripts
chr7: 163217177-163217273 [+]
intergenic
Clustered miRNAs
< 10kb from mml-mir-127
mml-mir-337chr7: 163207975-163208067 [+]
mml-mir-665chr7: 163208516-163208587 [+]
mml-mir-431chr7: 163215205-163215318 [+]
mml-mir-433chr7: 163216084-163216176 [+]
mml-mir-127chr7: 163217177-163217273 [+]
mml-mir-432chr7: 163218684-163218777 [+]
mml-mir-136chr7: 163218898-163218989 [+]
Database links

Mature sequence mml-miR-127-5p

Accession MIMAT0026570
Sequence

24 -  

ugaagcucagagggcucugauu

 - 45

Get sequence
Deep sequencing14371 reads, 9 experiments
Evidence experimental; Illumina [2]
Database links
Predicted targets

Mature sequence mml-miR-127-3p

Accession MIMAT0002281
Sequence

57 -  

ucggauccgucugagcuuggcu

 - 78

Get sequence
Deep sequencing258735 reads, 9 experiments
Evidence experimental; Illumina [2]
Database links
Predicted targets

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).
2
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).