Stem-loop sequence ptr-mir-144

AccessionMI0002554 (change log)
DescriptionPan troglodytes miR-144 stem-loop
Gene family MIPF0000093; mir-144
Stem-loop
   -u   -    u      g        a         -a    gc 
5'   ggg gccc ggcugg auaucauc uauacugua  guuu  g
     ||| |||| |||||| |||||||| |||||||||  ||||   
3'   ccc cggg cugauc uguaguag auaugacau  caga  a
   cu   a    c      a        -         ca    gu 
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Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (Pan_tro3.0; GCA_000001515.5) Overlapping transcripts
chr17: 28309472-28309557 [+]
intergenic
Clustered miRNAs
< 10kb from ptr-mir-144
ptr-mir-144chr17: 28309472-28309557 [+]
ptr-mir-451chr17: 28309651-28309721 [+]
Database links

Mature sequence ptr-miR-144

Accession MIMAT0002262
Sequence

52 - 

uacaguauagaugauguacuag

 - 73

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Evidence by similarity; MI0000460
Predicted targets

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).