Stem-loop sequence ppy-mir-135a-2

Accession

MI0002543 (change log)

Previous IDs

ppy-mir-135

Description

Pongo pygmaeus miR-135a-2 stem-loop

Gene family

MIPF0000028; mir-135

Stem-loop

   a   aaa     ucua   c            u            u g a 
5'  gau   uucac    gug uuuauggcuuuu auuccuauguga a u a
    |||   |||||    ||| |||||||||||| |||||||||||| | | u
3'  cua   aagug    cau aaguaccgaagg uagggauguacu u a a
   a   -aa     -uua   a            -            c g a 

Confidence

Annotation confidence: not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

• Coordinates (P_pygmaeus_2.0.2; GCF_000001545.4): chr12: 98797810-98797909 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0002543

Mature sequence ppy-miR-135a

• Accession: MIMAT0015757
• Sequence: 23 - uauggcuuuuuauuccuauguga - 45
• Evidence: not experimental

References

1. PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).