Stem-loop sequence ppy-mir-141

AccessionMI0002489 (change log)
DescriptionPongo pygmaeus miR-141 stem-loop
Gene family MIPF0000019; mir-8
Stem-loop
   u    g    u   uu      --    u        -   ugg  ua 
5'  ggcc gccc ggg  caucuu  ccag acaguguu gga   uc  a
    |||| |||| |||  ||||||  |||| |||||||| |||   ||  u
3'  uugg uggg ccc  guagaa  gguc ugucacaa ccu   ag  u
   c    g    c   cg      au    -        u   cga  ug 
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Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (P_pygmaeus_2.0.2; GCF_000001545.4) Overlapping transcripts
chr12: 7200096-7200190 [+]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-141
ppy-mir-200cchr12: 7199699-7199766 [+]
ppy-mir-141chr12: 7200096-7200190 [+]
Database links

Mature sequence ppy-miR-141

Accession MIMAT0002200
Sequence

60 - 

aacacugucugguaaagaugg

 - 80

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Evidence by similarity; MI0000457

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).