Stem-loop sequence hsa-mir-410

Accession

MI0002465

Symbol

HGNC:MIR410

Description

Homo sapiens miR-410 stem-loop

Gene family

MIPF0000018; mir-154

Stem-loop

     c      g    ug      a  a     - uuuu 
gguac ugagaa aggu  ucugug ug guucg c    a
||||| |||||| ||||  |||||| || ||||| |     
ccaug acuuuu uccg  agacac au uaagc g    u
     -      g    gu      a  a     a uaau 

Deep sequencing

104 reads, 4 experiments

Genome context

• Coordinates (GRCh37.p5): chr14: 101532249-101532328 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-410

• hsa-mir-323b: chr14: 101522556-101522637 [+]
• hsa-mir-154: chr14: 101526092-101526175 [+]
• hsa-mir-496: chr14: 101526910-101527011 [+]
• hsa-mir-377: chr14: 101528387-101528455 [+]
• hsa-mir-541: chr14: 101530832-101530915 [+]
• hsa-mir-409: chr14: 101531637-101531715 [+]
• hsa-mir-412: chr14: 101531784-101531874 [+]
• hsa-mir-369: chr14: 101531935-101532004 [+]
• hsa-mir-410: chr14: 101532249-101532328 [+]
• hsa-mir-656: chr14: 101533061-101533138 [+]

Database links

• EMBL: AY882266;AY882266
• ENTREZGENE: 574434;MIR410
• HGNC: 32065;MIR410

Mature sequence hsa-miR-410

• Accession: MIMAT0002171
• Sequence: 50 - aauauaacacagauggccugu - 70
• Deep sequencing: 104 reads, 4 experiments
• Evidence: experimental; array-cloned [2], cloned [3-5], Northern [3]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-410
  • MICRORNA.ORG:hsa-miR-410
  • MIRDB:hsa-miR-410
  • RNA22-HSA:hsa-miR-410
  • TARGETMINER:hsa-miR-410
  • TARGETSCAN-VERT:hsa-miR-410

References

1. PMID:15891114 "Clustering and conservation patterns of human microRNAs" Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H Nucleic Acids Res. 33:2697-2706(2005).
2. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
3. PMID:15978578 "Identification of human fetal liver miRNAs by a novel method" Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X FEBS Lett. 579:3849-3854(2005).
4. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
5. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).