Stem-loop sequence ssc-mir-216-1

Accession MI0002424
Previous IDs ssc-mir-216
Description Sus scrofa miR-216-1 stem-loop
Gene family MIPF0000054; mir-216
Stem-loop 
----------gaug   g  ag     u         cu   a      --a   -  u 
              gcu ug  uuggc uaaucucag  ggc acugug   gau gu c
              ||| ||  ||||| |||||||||  ||| ||||||   ||| ||  
              cga ac  aaucg auuaggguc  cug ugacac   cua ca a
ucccguuccuuuaa   g  -a     u         -u   g      ccc   a  u
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Genome context
Coordinates (Sscrofa9) Overlapping transcripts
3: 79165852-79165956 [+]
intergenic
Clustered miRNAs
< 10kb from ssc-mir-216-1
ssc-mir-216-1 3: 79165852-79165956 [+]
ssc-mir-217-1 3: 79172584-79172690 [+]
Database links
  • ENTREZGENE: 100316589;MIR216

Mature sequence ssc-miR-216

Accession MIMAT0002130
Sequence

19 -  

uaaucucagcuggcaacugugag

 - 41

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Evidence experimental; 454 [2], Solexa [3]
Predicted targets

References

1
PMID:15885146 "Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing" Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L BMC Genomics. 6:70(2005).
2
PMID:19196471 "Cloning, characterization and expression analysis of porcine microRNAs" Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R BMC Genomics. 10:65(2009).
3
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).