Stem-loop sequence ptc-MIR395a

Accession MI0002315
Description Populus trichocarpa miR395a stem-loop
Gene family MIPF0000016; MIR395
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-395_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

mir-395 is a non-coding RNA called a microRNA that was identified in both Arabidopsis thaliana and Oryza sativa computationally and was later experimentally verified. mir-395 is thought to target mRNAs coding for ATP sulphurylases. The mature sequence is excised from the 3' arm of the hairpin. miR-395 is upregulated in Arabidopsis during sulphate-limited conditions, when the mature miRNA then regulates sulphur transporters and ATP sulphurylases.

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Stem-loop 
  u    cu          u    u        cccgu   aagc          au   -     gcu   aaga       -gugu      --      -    aa       au 
gg cacc  gaguuccucc agcu cuucagua     gga    uaaugcuaca  uau cuuga   ggu    cuggcag     cagaug  uggaug uguu  agguaau  u
|| ||||  |||||||||| |||| ||||||||     |||    ||||||||||  ||| |||||   |||    |||||||     ||||||  |||||| ||||  |||||||  a
uc gugg  cucaaggagg uugg gaagucgu     ccu    auuauggugu  aua gaacu   uua    gauuguc     guuuau  acuuac gcgg  uuuauua  u
  -    au          u    -        uuagu   ---c          --   u     aau   -gga       aucuu      ga      c    ca       gu
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Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_2: 14667284-14667509 [+]
intergenic

Mature sequence ptc-miR395a

Accession MIMAT0002021
Sequence

198 -  

cugaaggguuuggaggaacuc

 - 218

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Evidence by similarity; MI0001012

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).