Stem-loop sequence ptc-MIR393c

Accession MI0002311
Description Populus trichocarpa miR393c stem-loop
Gene family MIPF0000083; MIR393
Stem-loop 
gcu    u     a            u          cucuc  ugu     u   a 
   ggag guucc aagggaucgcau gaucuaauga     ga   cuaaa cau u
   |||| ||||| |||||||||||| ||||||||||     ||   ||||| |||  
   ccuu uaagg uucccuagcgua cuagguugcu     uu   gauuu gua u
--a    u     a            -          -----  uuu     -   a
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Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_15: 13166756-13166862 [+]
intergenic

Mature sequence ptc-miR393c

Accession MIMAT0002017
Sequence

11 -  

uccaaagggaucgcauugauc

 - 31

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Evidence by similarity; MI0001004

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).