Stem-loop sequence ptc-MIR393b

Accession MI0002310
Description Populus trichocarpa miR393b stem-loop
Gene family MIPF0000083; MIR393
Stem-loop 
ag      c            c    u     c    guccc 
  aggagg auccaaagggau gcau gaucc gagu     u
  |||||| |||||||||||| |||| ||||| ||||     g
  uccucc uagguuucccua cgua cuagg uuua     g
--      u            u    -     u    auacc
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Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_10: 17888037-17888120 [-]
intergenic

Mature sequence ptc-miR393b-5p

Accession MIMAT0002016
Previous IDs ptc-miR393b
Sequence

11 -  

uccaaagggaucgcauugauc

 - 31

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Evidence experimental; miRNAseq [2]

Mature sequence ptc-miR393b-3p

Accession MIMAT0022909
Sequence

58 -  

aucaugcuaucccuuuggauu

 - 78

Get sequence
Evidence experimental; miRNAseq [2]

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).
2
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).