Stem-loop sequence ptc-MIR172i

Accession MI0002295
Description Populus trichocarpa miR172i stem-loop
Stem-loop 
---a    gugaag      -a    c     g  ---g     g   -ug     g ug    aaug 
    ugug      gcagca  gucg ggguu uu    uuggc aaa   guucu u  guug    g
    ||||      ||||||  |||| ||||| ||    ||||| |||   ||||| |  ||||     
    acac      cgucgu  uagu ccuaa ag    agcug uuu   caagg a  cgau    a
cgag    ----aa      ag    -     g  aaga     g   uga     a gu    gaga
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Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_8: 2531029-2531153 [+]
intergenic

Mature sequence ptc-miR172i

Accession MIMAT0002001
Sequence

97 -  

agaauccugaugaugcugcaa

 - 117

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Evidence by similarity; MI0000216

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).