Stem-loop sequence ptc-MIR169ab

Accession MI0002247
Description Populus trichocarpa miR169ab stem-loop
Gene family MIPF0000012; MIR169_1
Stem-loop 
ca  u ug  -  c     aa a   g    uc   gucuuagcugguuccagug 
  ug u  gc ag caagg  g cuu cccg  auc                   u
  || |  || || |||||  | ||| ||||  |||                   a
  ac a  cg uc guucc  c gaa gggu  ugg                   u
--  - gu  a  a     -a -   g    uu   uuuguuuuccacgauucau
Get sequence
Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_7: 6018895-6019001 [-]
intergenic
Clustered miRNAs
< 10kb from ptc-MIR169ab
ptc-MIR169x scaffold_7: 6023427-6023544 [-]
ptc-MIR169ad scaffold_7: 6019640-6019740 [-]
ptc-MIR169ab scaffold_7: 6018895-6019001 [-]

Mature sequence ptc-miR169ab

Accession MIMAT0001953
Sequence

10 -  

cagccaaggaagacuugccc

 - 29

Get sequence
Evidence by similarity; MI0000212

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).