Stem-loop sequence ptc-MIR162b

Accession MI0002210
Description Populus trichocarpa miR162b stem-loop
Gene family MIPF0000127; MIR162_1
Stem-loop 
uga    a       g    c    c       uu   c  aagauuuuu      u 
   gaag cacugga gcag gguu aucgauc  uuc ug         uuguuu a
   |||| ||||||| |||| |||| |||||||  ||| ||         |||||| c
   cuuc gugaccu cguc ccaa uagcuag  aag ac         aacaag a
ucc    -       a    u    a       cc   c  ---------      c
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Genome context
Coordinates (JGI_Poptr2.0) Overlapping transcripts
scaffold_15: 6727251-6727357 [+]
intergenic

Mature sequence ptc-miR162b

Accession MIMAT0001916
Sequence

78 -  

ucgauaaaccucugcauccag

 - 98

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Evidence experimental; cloned [1]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
"Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
3
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).